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rVarBase
SNP Report
Basic Infomation
Name
rs1420186  
dbSNP
Location
chr:2,65361059
Allele
C/A
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10173422
0.83[CHD][hapmap]
rs12713532
0.80[JPT][hapmap]
rs12713533
0.83[CHD][hapmap]
rs17040050
0.84[JPT][hapmap]
rs6546128
0.83[CHD][hapmap]
rs984748
0.83[CHD][hapmap]
rSNP related genes
Symbol
Regulation type
RAB1A
Proximal transcriptional regulation
RAB1A
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
APLF
SCAN
SLC1A4
SCAN
ACTR2
SCAN