SNP Report
Basic Infomation
| Name | rs13399032 dbSNP |
|---|---|
| Location | chr:2,61105065 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10168495 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10181536 | 1.00[AMR][1000 genomes] |
| rs10202991 | 1.00[AMR][1000 genomes] |
| rs13385603 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13410098 | 1.00[AMR][1000 genomes] |
| rs13410811 | 1.00[ASW][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13423945 | 0.85[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs13424407 | 1.00[AMR][1000 genomes] |
| rs13429481 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13431922 | 1.00[AMR][1000 genomes] |
| rs13432127 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs5013203 | 0.87[YRI][hapmap] |
| rs6729789 | 1.00[ASW][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72878575 | 1.00[AMR][1000 genomes] |
| rs7579962 | 1.00[AMR][1000 genomes] |
| rs7594850 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| REL | Proximal transcriptional regulation |
| ENSG00000228414 | Distal transcriptional regulation |
| REL | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014