SNP Report
Basic Infomation
| Name | rs131654 dbSNP |
|---|---|
| Location | chr:22,21917190 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1034329 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs11089629 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs131665 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs140489 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs140491 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs140492 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs140498 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs140499 | 0.83[JPT][hapmap] |
| rs181359 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs181360 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs181363 | 0.83[JPT][hapmap] |
| rs2070512 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs2283790 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs2298429 | 0.83[JPT][hapmap] |
| rs374387 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs417986 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4820091 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs4821108 | 0.83[JPT][hapmap] |
| rs5754217 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs5754467 | 0.83[JPT][hapmap] |
| rs5998599 | 0.83[JPT][hapmap] |
| rs5998619 | 0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs861857 | 0.82[CHD][hapmap];0.87[JPT][hapmap] |
| rs878825 | 0.83[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| UBE2L3 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014