SNP Report
Basic Infomation
| Name | rs1314921 dbSNP |
|---|---|
| Location | chr:14,68715181 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 62)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1028842 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1080321 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11628885 | 0.98[EUR][1000 genomes] |
| rs1274637 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1274638 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1274639 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1274640 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1274641 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1274642 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1274643 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1274644 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1274645 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1274646 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1274647 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1274648 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1274649 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1274650 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1274651 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1274652 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1274653 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1274654 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1274655 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1274656 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1274657 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1274658 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1274659 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1274661 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1290939 | 0.89[AMR][1000 genomes] |
| rs1295780 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1295781 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1295782 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1296527 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1298340 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1299581 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1314911 | 0.95[EUR][1000 genomes] |
| rs1314912 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1314913 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1314914 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1314915 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1314916 | 0.99[EUR][1000 genomes] |
| rs1314918 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1314919 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1315984 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1316014 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1316118 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1316170 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1536455 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17105269 | 0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1744947 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1744949 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1744959 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1751381 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1751382 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1951631 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2255767 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2588808 | 0.85[AMR][1000 genomes] |
| rs2588809 | 0.81[AMR][1000 genomes] |
| rs2767377 | 0.81[EUR][1000 genomes] |
| rs2767378 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs34409637 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7155764 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs725453 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| ENSG00000259038 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014