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rVarBase
SNP Report
Basic Infomation
Name
rs13038523  
dbSNP
Location
chr:20,44724340
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1569723
1.00[YRI][hapmap]
rs16991114
0.88[MEX][hapmap];1.00[YRI][hapmap]
rs1883832
1.00[YRI][hapmap]
rs2425752
1.00[YRI][hapmap]
rs6032662
1.00[YRI][hapmap]
rs6032664
1.00[YRI][hapmap]
rs6065926
1.00[YRI][hapmap]
rs6074022
1.00[YRI][hapmap]
rs74174997
0.92[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
RPL13P2
Proximal transcriptional regulation
NCOA5
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
DLX4
SCAN