SNP Report
Basic Infomation
| Name | rs12973899 dbSNP |
|---|---|
| Location | chr:19,10621043 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10405870 | 1.00[EUR][1000 genomes] |
| rs10411070 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10412246 | 0.96[EUR][1000 genomes] |
| rs1048287 | 0.92[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs11878494 | 0.89[EUR][1000 genomes] |
| rs11879158 | 0.87[EUR][1000 genomes] |
| rs11879547 | 0.96[EUR][1000 genomes] |
| rs11880062 | 0.96[EUR][1000 genomes] |
| rs11880127 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11882859 | 1.00[EUR][1000 genomes] |
| rs12720343 | 1.00[CHB][hapmap] |
| rs12978354 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12985702 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13346189 | 0.92[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs2304254 | 1.00[CHB][hapmap] |
| rs28665500 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs34197572 | 1.00[MKK][hapmap];0.89[EUR][1000 genomes] |
| rs34256230 | 0.89[EUR][1000 genomes] |
| rs34346015 | 0.89[EUR][1000 genomes] |
| rs34777454 | 0.90[EUR][1000 genomes] |
| rs34983936 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs35072639 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35295222 | 0.89[EUR][1000 genomes] |
| rs35467002 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35597394 | 0.90[EUR][1000 genomes] |
| rs35817519 | 0.90[EUR][1000 genomes] |
| rs35948484 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74179932 | 0.95[EUR][1000 genomes] |
| rs8111926 | 1.00[EUR][1000 genomes] |
| rs8113472 | 0.92[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs9749588 | 0.90[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ATG4D | Distal transcriptional regulation |
| AP1M2 | Distal transcriptional regulation |
| ENSG00000238364 | Distal transcriptional regulation |
| MIR1238 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014