SNP Report
Basic Infomation
| Name | rs12895438 dbSNP |
|---|---|
| Location | chr:14,69122391 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12878143 | 1.00[ASN][1000 genomes] |
| rs17106102 | 0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs17757282 | 1.00[ASW][hapmap] |
| rs2024944 | 0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2064825 | 0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2145155 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs41506147 | 1.00[ASW][hapmap] |
| rs4899247 | 0.84[EUR][1000 genomes] |
| rs4902624 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6573846 | 0.87[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs6573847 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6573848 | 0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6573849 | 0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7144613 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7147776 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7148690 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs761951 | 1.00[ASW][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs8009034 | 1.00[ASW][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs8010030 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs8010921 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs8016840 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAD51B | Distal transcriptional regulation |
| ZFP36L1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014