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rVarBase
SNP Report
Basic Infomation
Name
rs12801636  
dbSNP
Location
chr:11,65391317
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1078457
0.82[EUR][1000 genomes]
rs12790427
0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4930295
0.97[EUR][1000 genomes]
rs66864335
0.97[EUR][1000 genomes]
rs749112
0.85[CEU][hapmap];0.83[CHB][hapmap]
rSNP related genes
Symbol
Regulation type
PCNXL3
Proximal transcriptional regulation
CFL1
Distal transcriptional regulation
MUS81
Distal transcriptional regulation
LTBP3
Distal transcriptional regulation
PCNXL3
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
eQTL related gene
Source
VEGFB
SCAN
SART1
SCAN
SYT12
SCAN
SNORD27
SCAN
BATF2
SCAN
POLA2
SCAN
MAP3K11
SCAN