SNP Report
Basic Infomation
| Name | rs12721414 dbSNP |
|---|---|
| Location | chr:12,48340009 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12721417 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12721423 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs12721428 | 1.00[AFR][1000 genomes] |
| rs12814542 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs12821733 | 0.86[AMR][1000 genomes] |
| rs12822608 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs1859448 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2070739 | 1.00[AFR][1000 genomes] |
| rs2158514 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2286023 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs2286025 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs28594309 | 0.87[AMR][1000 genomes] |
| rs34829929 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs36029544 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3923693 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4288816 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VDR | Proximal transcriptional regulation |
| RPAP3 | Distal transcriptional regulation |
| ENSG00000257433 | Distal transcriptional regulation |
| VDR | Distal transcriptional regulation |
| COL2A1 | Distal transcriptional regulation |
| TMEM106C | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014