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rVarBase
SNP Report
Basic Infomation
Name
rs12720349  
dbSNP
Location
chr:19,10482884
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12720339
1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12720341
1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12720345
1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12720354
1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2004370
1.00[AFR][1000 genomes]
rs2304255
1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7252450
0.82[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
TYK2
Proximal transcriptional regulation
TYK2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)