SNP Report
Basic Infomation
| Name | rs12654812 dbSNP |
|---|---|
| Location | chr:5,176794191 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10051765 | 0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11135015 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11738681 | 0.81[CEU][hapmap] |
| rs11746443 | 0.84[CEU][hapmap] |
| rs35716097 | 0.89[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs4074995 | 0.88[CEU][hapmap] |
| rs4075958 | 0.88[CEU][hapmap] |
| rs4976646 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4976647 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4976688 | 0.96[CEU][hapmap] |
| rs4976689 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs56235845 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6556313 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67111717 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6876677 | 0.87[CEU][hapmap] |
| rs7713145 | 0.83[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RGS14 | Proximal transcriptional regulation |
| MXD3 | Distal transcriptional regulation |
| SLC34A1 | Distal transcriptional regulation |
| GRK6 | Distal transcriptional regulation |
| F12 | Distal transcriptional regulation |
| RAB24 | Distal transcriptional regulation |
| PRELID1 | Distal transcriptional regulation |
| PDLIM7 | Distal transcriptional regulation |
| LMAN2 | Distal transcriptional regulation |
| RGS14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CLK4 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014