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rVarBase
SNP Report
Basic Infomation
Name
rs12624649  
dbSNP
Location
chr:20,44613436
Allele
T/A
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs3918250
1.00[AMR][1000 genomes]
rs58845067
1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73622639
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73622640
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73622641
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73622642
1.00[AMR][1000 genomes]
rs73622643
0.96[AFR][1000 genomes]
rs73622644
0.92[AFR][1000 genomes]
rs73622648
0.88[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ZNF335
Distal transcriptional regulation
FTLP1
Distal transcriptional regulation
ENSG00000203346
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)