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rVarBase
SNP Report
Basic Infomation
Name
rs1250565  
dbSNP
Location
chr:10,81047015
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1108618
0.88[ASN][1000 genomes]
rs1250540
0.89[EUR][1000 genomes]
rs1250542
0.89[EUR][1000 genomes]
rs1250544
0.88[EUR][1000 genomes]
rs1250563
0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1250564
0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1250566
0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1250568
0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1892497
0.82[ASN][1000 genomes]
rs2802372
0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs942793
0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ZMIZ1
Distal transcriptional regulation
PPIF
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)