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rVarBase
SNP Report
Basic Infomation
Name
rs12432197  
dbSNP
Location
chr:14,69088185
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10483815
0.89[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs12882449
0.90[ASN][1000 genomes]
rs12890235
0.89[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs17756615
0.90[ASN][1000 genomes]
rs2145153
0.83[ASW][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2145154
0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2273486
0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs8010235
0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000259038
Distal transcriptional regulation
RAD51B
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
eQTL related gene
Source
CDC20
SCAN
FUT8
SCAN
ZBTB25
SCAN
GPX2
SCAN
ACTN1
SCAN