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rVarBase
SNP Report
Basic Infomation
Name
rs12355138  
dbSNP
Location
chr:10,60140709
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10826177
0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11006129
1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11006130
1.00[ASW][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs16912200
1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3876
1.00[ASN][1000 genomes]
rs3900887
1.00[ASW][hapmap];1.00[CHB][hapmap];0.89[TSI][hapmap];1.00[ASN][1000 genomes]
rs41283696
1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
TFAM
Proximal transcriptional regulation
UBE2D1
Distal transcriptional regulation
TFAM
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
PXN
SCAN
BICC1
SCAN