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rVarBase
SNP Report
Basic Infomation
Name
rs1230666  
dbSNP
Location
chr:1,114173410
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11102638
1.00[LWK][hapmap]
rs12022213
1.00[LWK][hapmap]
rs12022849
1.00[LWK][hapmap]
rs12024139
1.00[LWK][hapmap]
rs12026682
1.00[LWK][hapmap]
rs12038473
1.00[LWK][hapmap]
rs12039944
1.00[LWK][hapmap]
rs1230661
0.84[MKK][hapmap]
rs1573996
1.00[LWK][hapmap]
rs17031716
0.84[MKK][hapmap]
rs1936927
1.00[LWK][hapmap]
rs6679677
1.00[ASW][hapmap]
rSNP related genes
Symbol
Regulation type
MAGI3
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
PHTF1
SCAN
CYB561D1
SCAN
PHTF1
SCAN