SNP Report
Basic Infomation
| Name | rs12267563 dbSNP |
|---|---|
| Location | chr:10,81927219 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10466227 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10466228 | 0.82[ASW][hapmap] |
| rs11201965 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11201972 | 0.82[ASW][hapmap] |
| rs11201973 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12249846 | 1.00[CHD][hapmap] |
| rs12249927 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12253057 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12256429 | 0.82[ASW][hapmap] |
| rs12269637 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60485216 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61691422 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6585424 | 0.82[ASW][hapmap] |
| rs6585454 | 0.82[ASW][hapmap] |
| rs7074217 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ANXA11 | Distal transcriptional regulation |
| ANXA11 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014