SNP Report
Basic Infomation
| Name | rs12109627 dbSNP |
|---|---|
| Location | chr:5,150154835 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10044819 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10051308 | 1.00[YRI][hapmap] |
| rs10052610 | 1.00[YRI][hapmap] |
| rs10067102 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10068444 | 1.00[AFR][1000 genomes] |
| rs10077739 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs10476752 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10476942 | 1.00[YRI][hapmap] |
| rs12110242 | 1.00[YRI][hapmap] |
| rs12656603 | 1.00[YRI][hapmap] |
| rs13358282 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13359503 | 1.00[YRI][hapmap] |
| rs13361877 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2290989 | 1.00[YRI][hapmap] |
| rs28526526 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SMIM3 | Proximal transcriptional regulation |
| ENSG00000269636 | Proximal transcriptional regulation |
| DCTN4 | Distal transcriptional regulation |
| SMIM3 | Distal transcriptional regulation |
| ENSG00000269636 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014