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rVarBase
SNP Report
Basic Infomation
Name
rs12103  
dbSNP
Location
chr:1,1247494
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11590283
0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12142199
0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1240708
0.82[ASN][1000 genomes]
rs1240709
0.82[ASN][1000 genomes]
rs35946613
0.84[EUR][1000 genomes]
rs61766198
0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CPSF3L
Proximal transcriptional regulation
ACAP3
Proximal transcriptional regulation
ATAD3A
Distal transcriptional regulation
CCNL2
Distal transcriptional regulation
ENSG00000224870
Distal transcriptional regulation
CPSF3L
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)