SNP Report
Basic Infomation
| Name | rs12060836 dbSNP |
|---|---|
| Location | chr:1,114249324 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10858005 | 1.00[YRI][hapmap] |
| rs10858007 | 1.00[YRI][hapmap] |
| rs10858008 | 1.00[YRI][hapmap] |
| rs10858011 | 1.00[YRI][hapmap] |
| rs10858018 | 0.85[YRI][hapmap] |
| rs11102654 | 1.00[YRI][hapmap] |
| rs11102691 | 1.00[YRI][hapmap] |
| rs1146182 | 1.00[YRI][hapmap] |
| rs1146187 | 1.00[YRI][hapmap] |
| rs12069381 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12071676 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12086805 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12094790 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12095235 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1217377 | 0.85[YRI][hapmap] |
| rs1217380 | 0.85[YRI][hapmap] |
| rs1217388 | 0.85[YRI][hapmap] |
| rs1217389 | 0.85[YRI][hapmap] |
| rs1217395 | 0.85[YRI][hapmap] |
| rs1217396 | 0.85[YRI][hapmap] |
| rs1217410 | 0.85[YRI][hapmap] |
| rs1217412 | 0.85[YRI][hapmap] |
| rs1230640 | 1.00[YRI][hapmap] |
| rs1230645 | 1.00[YRI][hapmap] |
| rs1230647 | 1.00[YRI][hapmap] |
| rs1230649 | 1.00[YRI][hapmap] |
| rs1230658 | 1.00[YRI][hapmap] |
| rs1230659 | 1.00[YRI][hapmap] |
| rs12565589 | 1.00[YRI][hapmap] |
| rs1343125 | 1.00[YRI][hapmap] |
| rs1343128 | 1.00[YRI][hapmap] |
| rs1418958 | 1.00[YRI][hapmap] |
| rs2636013 | 1.00[YRI][hapmap] |
| rs7536360 | 1.00[YRI][hapmap] |
| rs9429730 | 0.85[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PHTF1 | Proximal transcriptional regulation |
| ENSG00000232450 | Distal transcriptional regulation |
| PHTF1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014