SNP Report
Basic Infomation
| Name | rs1195964 dbSNP |
|---|---|
| Location | chr:11,64942483 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11227147 | 0.85[CEU][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1195963 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12279142 | 0.84[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17884154 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2089921 | 0.86[ASN][1000 genomes] |
| rs4492832 | 0.84[CEU][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs542380 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs552403 | 0.86[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs580734 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs600135 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs678296 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs678343 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7102307 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7116156 | 0.85[CEU][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MRPL49 | Distal transcriptional regulation |
| SYVN1 | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| ZNHIT2 | Distal transcriptional regulation |
| FAU | Distal transcriptional regulation |
| ENSG00000222477 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014