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rVarBase
SNP Report
Basic Infomation
Name
rs1187952  
dbSNP
Location
chr:11,63790496
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12421758
0.83[AFR][1000 genomes]
rs489976
0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs527239
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535883
0.90[ASN][1000 genomes]
rs545902
0.90[ASN][1000 genomes]
rs563391
0.97[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
OTUB1
Distal transcriptional regulation
MACROD1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)