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rVarBase
SNP Report
Basic Infomation
Name
rs11878853  
dbSNP
Location
chr:19,10594938
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10415088
0.82[EUR][1000 genomes]
rs11666754
0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11668623
0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11669094
0.89[ASN][1000 genomes]
rs11670508
0.82[EUR][1000 genomes]
rs12971603
0.87[ASN][1000 genomes]
rs12974442
0.91[EUR][1000 genomes]
rs57653312
0.91[EUR][1000 genomes]
rs59351473
0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60956147
0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62131889
0.88[EUR][1000 genomes]
rs7246953
0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7247667
0.88[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ATG4D
Distal transcriptional regulation
KEAP1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)