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rVarBase
SNP Report
Basic Infomation
Name
rs11868845  
dbSNP
Location
chr:17,5419804
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11871513
1.00[AMR][1000 genomes]
rs11871568
0.88[CHB][hapmap];0.98[ASN][1000 genomes]
rs12150023
0.87[ASN][1000 genomes]
rs16954851
1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1806229
1.00[MEX][hapmap]
rs3026123
1.00[MEX][hapmap]
rs3026147
1.00[MEX][hapmap]
rSNP related genes
Symbol
Regulation type
RNU7-31P
Proximal transcriptional regulation
NLRP1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)