SNP Report
Basic Infomation
| Name | rs11806184 dbSNP |
|---|---|
| Location | chr:1,201331379 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11807637 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12068574 | 0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12073852 | 0.89[CEU][hapmap];0.85[GIH][hapmap];0.90[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12074314 | 0.92[EUR][1000 genomes] |
| rs12076689 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12084456 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12087692 | 0.89[CEU][hapmap];0.85[GIH][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12091888 | 0.81[CHB][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12564284 | 0.89[CEU][hapmap];0.85[GIH][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17426255 | 0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2275860 | 1.00[CEU][hapmap];0.85[GIH][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2275861 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28485300 | 0.80[CHB][hapmap] |
| rs3767545 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs45584633 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs59855547 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs61819990 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs61819993 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs61819994 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs61819996 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7540834 | 0.81[ASW][hapmap];0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNT2 | Proximal transcriptional regulation |
| LAD1 | Distal transcriptional regulation |
| TNNT2 | Distal transcriptional regulation |
| TNNT2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014