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rVarBase
SNP Report
Basic Infomation
Name
rs11802960  
dbSNP
Location
chr:1,207013177
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11799303
0.87[YRI][hapmap]
rs1800890
1.00[JPT][hapmap]
rs2243160
0.84[ASW][hapmap];0.83[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2243183
0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34642536
1.00[ASN][1000 genomes]
rs34967806
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55927712
0.95[AFR][1000 genomes]
rs56292446
0.91[AFR][1000 genomes]
rs60770365
0.95[AFR][1000 genomes]
rs74148871
0.95[AFR][1000 genomes]
rs74148875
0.95[AFR][1000 genomes]
rs7530109
0.95[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
IL19
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)