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rVarBase
SNP Report
Basic Infomation
Name
rs11801967  
dbSNP
Location
chr:1,1256033
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10449893
0.94[ASW][hapmap];0.97[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35573647
1.00[MEX][hapmap]
rs3818448
1.00[MEX][hapmap]
rs4534327
1.00[MEX][hapmap]
rs61735961
1.00[AMR][1000 genomes]
rs61735963
1.00[AMR][1000 genomes]
rs74045418
0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CPSF3L
Proximal transcriptional regulation
GLTPD1
Proximal transcriptional regulation
ENSG00000240731
Proximal transcriptional regulation
CPSF3L
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)