SNP Report
Basic Infomation
| Name | rs11793840 dbSNP |
|---|---|
| Location | chr:9,139378518 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 44)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10781495 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10781497 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10870066 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10870067 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10870068 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10870069 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10870070 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10870072 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10870073 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10870074 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10870075 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10870076 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10870182 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10870184 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10870188 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10870193 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10870197 | 0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10870199 | 0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10870203 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11145753 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11145755 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11145761 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11146028 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11146030 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1127162 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1128877 | 0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11794124 | 0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12237866 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3812589 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3812590 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3812592 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4451431 | 0.82[ASN][1000 genomes] |
| rs4582662 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs56655553 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs57242780 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs59195487 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7019026 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7863729 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7863756 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7864414 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7864967 | 0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7869821 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9657743 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9657744 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C9orf163 | Proximal transcriptional regulation |
| COA6 | Distal transcriptional regulation |
| ENSG00000231663 | Distal transcriptional regulation |
| RPL3 | Distal transcriptional regulation |
| SNORD43 | Distal transcriptional regulation |
| APEH | Distal transcriptional regulation |
| BRD9 | Distal transcriptional regulation |
| TRIP13 | Distal transcriptional regulation |
| ENSG00000249572 | Distal transcriptional regulation |
| TARS | Distal transcriptional regulation |
| GPSM1 | Distal transcriptional regulation |
| SDCCAG3 | Distal transcriptional regulation |
| PMPCA | Distal transcriptional regulation |
| INPP5E | Distal transcriptional regulation |
| EGFL7 | Distal transcriptional regulation |
| SNORA17 | Distal transcriptional regulation |
| SNHG7 | Distal transcriptional regulation |
| FAM69B | Distal transcriptional regulation |
| ENSG00000221693 | Distal transcriptional regulation |
| AGPAT2 | Distal transcriptional regulation |
| SNORA43 | Distal transcriptional regulation |
| NOTCH1 | Distal transcriptional regulation |
| ENSG00000237886 | Distal transcriptional regulation |
| MIR4674 | Distal transcriptional regulation |
| HIST2H2BE | Distal transcriptional regulation |
| HIST2H2AC | Distal transcriptional regulation |
| BOLA1 | Distal transcriptional regulation |
| ENSG00000267845 | Distal transcriptional regulation |
| SNAPC4 | Distal transcriptional regulation |
| SEC16A | Distal transcriptional regulation |
| MIR4673 | Distal transcriptional regulation |
| TMEM141 | Distal transcriptional regulation |
| ENSG00000201524 | Distal transcriptional regulation |
| ING5 | Distal transcriptional regulation |
| DNLZ | Distal transcriptional regulation |
| ENSG00000227512 | Distal transcriptional regulation |
| C9orf163 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014