SNP Report
Basic Infomation
| Name | rs11612508 dbSNP |
|---|---|
| Location | chr:12,12657513 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10845553 | 0.83[ASN][1000 genomes] |
| rs10845554 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs10845557 | 0.88[ASN][1000 genomes] |
| rs10845562 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.92[ASN][1000 genomes] |
| rs10845565 | 0.92[ASN][1000 genomes] |
| rs10845569 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs11054925 | 0.83[ASN][1000 genomes] |
| rs11054926 | 0.92[ASN][1000 genomes] |
| rs11054935 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11054956 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11054957 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11609905 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12368847 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12424448 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs12819116 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.92[ASN][1000 genomes] |
| rs17312926 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs17379216 | 1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2417191 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.92[ASN][1000 genomes] |
| rs35045758 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs736107 | 0.88[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap] |
| rs747726 | 0.84[CEU][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes] |
| rs888197 | 1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DUSP16 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014