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rVarBase
SNP Report
Basic Infomation
Name
rs11569642  
dbSNP
Location
chr:20,44537355
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 3)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11569631
1.00[AFR][1000 genomes]
rs16990922
1.00[EUR][1000 genomes]
rs41282780
1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CTSA
Distal transcriptional regulation
NEURL2
Distal transcriptional regulation
PCIF1
Distal transcriptional regulation
SPATA25
Distal transcriptional regulation
PLTP
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)