SNP Report
Basic Infomation
| Name | rs11557123 dbSNP |
|---|---|
| Location | chr:20,44718227 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10485438 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11086996 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12480077 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12480308 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12480309 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs16991058 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1950174 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2206892 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4410344 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4410345 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4414741 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4578917 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4810484 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6032637 | 0.88[EUR][1000 genomes] |
| rs6032638 | 0.88[EUR][1000 genomes] |
| rs62215581 | 0.89[EUR][1000 genomes] |
| rs62215583 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62215598 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62215600 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7266662 | 0.90[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EPHA2 | Distal transcriptional regulation |
| MRPS16 | Distal transcriptional regulation |
| ENSG00000227540 | Distal transcriptional regulation |
| STX5 | Distal transcriptional regulation |
| ADAM10 | Distal transcriptional regulation |
| PHF23 | Distal transcriptional regulation |
| ANXA1 | Distal transcriptional regulation |
| TOMM34 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| ENSG00000203346 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| CD40 | Distal transcriptional regulation |
| SYS1 | Distal transcriptional regulation |
| SYS1-DBNDD2 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| SLC35C2 | Distal transcriptional regulation |
| NCOA5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014