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rVarBase
SNP Report
Basic Infomation
Name
rs11549690  
dbSNP
Location
chr:11,63991581
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11608180
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277260
1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12806196
1.00[LWK][hapmap]
rs35169799
1.00[LWK][hapmap]
rs4672
0.87[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
NUDT22
Proximal transcriptional regulation
MGRN1
Distal transcriptional regulation
STIP1
Distal transcriptional regulation
TEX40
Distal transcriptional regulation
ESRRA
Distal transcriptional regulation
TRPT1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
PRF1
seeQTL