SNP Report
Basic Infomation
| Name | rs11542747 dbSNP |
|---|---|
| Location | chr:10,81965227 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11202082 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11202112 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11202114 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11202145 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11202150 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11202162 | 0.87[EUR][1000 genomes] |
| rs11202173 | 0.82[AMR][1000 genomes] |
| rs11202175 | 0.82[AMR][1000 genomes] |
| rs11202189 | 0.82[AMR][1000 genomes] |
| rs12761124 | 0.82[AMR][1000 genomes] |
| rs12773794 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12785212 | 0.82[AMR][1000 genomes] |
| rs34074920 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34504350 | 0.82[AMR][1000 genomes] |
| rs34507529 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4447114 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ANXA11 | Proximal transcriptional regulation |
| ENSG00000237523 | Proximal transcriptional regulation |
| RNF6 | Distal transcriptional regulation |
| SH3GLB2 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| ELP3 | Distal transcriptional regulation |
| ANXA11 | Distal transcriptional regulation |
| PLAC9 | Distal transcriptional regulation |
| FAM213A | Distal transcriptional regulation |
| ENSG00000234319 | Distal transcriptional regulation |
| ANXA11 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014