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rVarBase
SNP Report
Basic Infomation
Name
rs11466668  
dbSNP
Location
chr:1,1142726
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11466667
1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs35160621
1.00[AFR][1000 genomes]
rs3818448
1.00[LWK][hapmap]
rs715643
1.00[LWK][hapmap]
rSNP related genes
Symbol
Regulation type
TNFRSF18
Proximal transcriptional regulation
HES4
Distal transcriptional regulation
UBE2J2
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)