SNP Report
Basic Infomation
| Name | rs11465615 dbSNP |
|---|---|
| Location | chr:2,102991163 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169192 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10193485 | 0.93[AMR][1000 genomes] |
| rs10196334 | 0.93[AMR][1000 genomes] |
| rs10200081 | 0.93[AMR][1000 genomes] |
| rs11465700 | 0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11886793 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13383602 | 0.95[AMR][1000 genomes] |
| rs1523205 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2160200 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4851010 | 0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4851592 | 0.95[AMR][1000 genomes] |
| rs4851593 | 0.95[AMR][1000 genomes] |
| rs61122764 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs62154972 | 0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6543136 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6543138 | 0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6543143 | 0.95[AMR][1000 genomes] |
| rs6543144 | 0.93[AMR][1000 genomes] |
| rs6736135 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6748390 | 0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6761350 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7602207 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs917999 | 0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs918000 | 0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL18R1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014