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rVarBase
SNP Report
Basic Infomation
Name
rs1131820  
dbSNP
Location
chr:1,154744852
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12087736
1.00[JPT][hapmap]
rs1777930
1.00[JPT][hapmap]
rs4492614
1.00[CHD][hapmap]
rs4845392
1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs6682291
1.00[CHB][hapmap]
rSNP related genes
Symbol
Regulation type
KCNN3
Distal transcriptional regulation
KCNN3
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
eQTL related gene
Source
JOSD1
SCAN
ANP32E
SCAN
PMVK
SCAN
S100A9
SCAN
HIST2H2BE
SCAN
LYSMD1
SCAN
HRNR
SCAN
S100A12
SCAN
S100A7L2
SCAN