SNP Report
Basic Infomation
| Name | rs11231890 dbSNP |
|---|---|
| Location | chr:11,64611543 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231886 | 0.82[CHB][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11231889 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12365548 | 0.85[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12365873 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12365878 | 0.85[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12790925 | 0.85[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12798965 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs35654492 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs35938015 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3825015 | 1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4930277 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4930682 | 0.95[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4930683 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs58790228 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7933683 | 0.90[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7936466 | 0.84[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7942905 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs916606 | 0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| ENSG00000269290 | Distal transcriptional regulation |
| MAP4K2 | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| ZNHIT2 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| MEN1 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| SYVN1 | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| ATG2A | Distal transcriptional regulation |
| MRPL49 | Distal transcriptional regulation |
| FAU | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| CDC42BPG | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014