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rVarBase
SNP Report
Basic Infomation
Name
rs11230865  
dbSNP
Location
chr:11,61784398
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12271166
1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12280359
0.85[YRI][hapmap];0.87[AFR][1000 genomes]
rs12287344
0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290643
0.85[AFR][1000 genomes]
rs12798170
0.84[ASN][1000 genomes]
rs3781968
1.00[CHB][hapmap]
rs4963447
0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58048250
0.88[AFR][1000 genomes]
rs58473786
0.87[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000244176
Proximal transcriptional regulation
FTH1
Distal transcriptional regulation
ENSG00000269089
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)