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rVarBase
SNP Report
Basic Infomation
Name
rs11202059  
dbSNP
Location
chr:10,81954843
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12263829
1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570993
0.82[EUR][1000 genomes]
rs3762098
0.82[EUR][1000 genomes]
rs3851052
0.81[TSI][hapmap]
rs59117417
0.82[EUR][1000 genomes]
rs7071174
0.88[TSI][hapmap]
rs7092401
1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72807965
0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72807975
0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72809517
0.85[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ANXA11
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)