SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10881970	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186687	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186698	0.90[ASN][1000 genomes]
rs1538831	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1630388	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17347260	0.83[EUR][1000 genomes]
rs1770469	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1772187	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3802649	0.90[ASN][1000 genomes]
rs7083959	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7910742	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7919191	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9420573	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000228701	Distal transcriptional regulation
TNKS2	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)