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rVarBase
SNP Report
Basic Infomation
Name
rs11185939  
dbSNP
Location
chr:10,82298801
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 2)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12411484
1.00[ASW][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs12412927
1.00[ASW][hapmap]
rSNP related genes
Symbol
Regulation type
SH2D4B
Proximal transcriptional regulation
ENSG00000226659
Proximal transcriptional regulation
ENSG00000226659
Distal transcriptional regulation
SH2D4B
Distal transcriptional regulation
TSPAN14
Distal transcriptional regulation
SH2D4B
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
eQTL related gene
Source
C13orf40
seeQTL
RGS3
SCAN
HSF5
SCAN
FLJ16686
SCAN