SNP Report
Basic Infomation
| Name | rs11168194 dbSNP |
|---|---|
| Location | chr:12,48059284 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875683 | 0.90[CHD][hapmap];0.81[JPT][hapmap] |
| rs11168186 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11830795 | 0.81[JPT][hapmap] |
| rs11834770 | 0.81[JPT][hapmap] |
| rs1235152 | 0.81[JPT][hapmap] |
| rs12819759 | 0.81[JPT][hapmap] |
| rs2074531 | 0.90[CHD][hapmap];0.81[JPT][hapmap] |
| rs2074532 | 0.87[CHD][hapmap];0.81[JPT][hapmap] |
| rs2238144 | 0.81[JPT][hapmap] |
| rs2239188 | 0.90[CHD][hapmap];0.81[JPT][hapmap] |
| rs2283345 | 0.81[JPT][hapmap] |
| rs2285830 | 0.84[CHD][hapmap];0.81[JPT][hapmap] |
| rs3764014 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3764015 | 0.81[JPT][hapmap] |
| rs3764020 | 0.90[CHD][hapmap];0.81[JPT][hapmap] |
| rs6580635 | 0.81[JPT][hapmap] |
| rs6580636 | 0.81[JPT][hapmap] |
| rs7306556 | 0.81[JPT][hapmap] |
| rs74088038 | 0.93[EUR][1000 genomes] |
| rs74088046 | 0.85[EUR][1000 genomes] |
| rs757284 | 0.90[CHD][hapmap];0.81[JPT][hapmap] |
| rs7967336 | 0.81[JPT][hapmap] |
| rs7967546 | 0.90[CHD][hapmap];0.81[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPAP3 | Proximal transcriptional regulation |
| RPAP3 | Distal transcriptional regulation |
| ENSG00000257433 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014