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rVarBase
SNP Report
Basic Infomation
Name
rs11145758  
dbSNP
Location
chr:9,139373732
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10046842
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28403081
1.00[AMR][1000 genomes]
rs28494828
1.00[AMR][1000 genomes]
rs28683734
1.00[AMR][1000 genomes]
rs7874030
1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SEC16A
Proximal transcriptional regulation
C9orf163
Proximal transcriptional regulation
INPP5E
Distal transcriptional regulation
SEC16A
Distal transcriptional regulation
EGFL7
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)