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rVarBase
SNP Report
Basic Infomation
Name
rs10897458  
dbSNP
Location
chr:11,63651036
Allele
A/T
LD-proxy of rSNPs(r
2
>0.8) (count: 2)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11231629
0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs501095
1.00[YRI][hapmap]
rSNP related genes
Symbol
Regulation type
MARK2
Proximal transcriptional regulation
ENSG00000202089
Proximal transcriptional regulation
ENSG00000255651
Distal transcriptional regulation
MARK2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
eQTL related gene
Source
IFNGR1
SCAN
COX8A
seeQTL
HRASLS3
Pritchard
SCGB2A1
SCAN
HNRNPUL2
SCAN