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rVarBase
SNP Report
Basic Infomation
Name
rs10897238  
dbSNP
Location
chr:11,61978935
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11230973
0.81[EUR][1000 genomes]
rs2232937
0.80[EUR][1000 genomes]
rs3862393
0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55645185
0.90[EUR][1000 genomes]
rs61893721
0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61893724
0.87[EUR][1000 genomes]
rs72915236
0.90[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SCGB2A1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)