SNP Report
Basic Infomation
| Name | rs10873210 dbSNP |
|---|---|
| Location | chr:14,68400465 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 81)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10129355 | 0.85[CEU][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10129612 | 0.90[CEU][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10130829 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10132022 | 0.90[CEU][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes] |
| rs10133262 | 0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10136129 | 0.85[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10136174 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10136790 | 0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10140097 | 0.85[CEU][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10140282 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10143455 | 0.84[CEU][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10143843 | 0.85[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10144995 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10148527 | 0.90[ASN][1000 genomes] |
| rs10151387 | 0.86[ASN][1000 genomes] |
| rs10467735 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11158715 | 0.89[CEU][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11158717 | 0.85[EUR][1000 genomes] |
| rs11622243 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11622787 | 0.85[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11623355 | 0.84[CEU][hapmap] |
| rs11626280 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11844529 | 0.85[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11846344 | 0.84[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11850191 | 0.84[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11852180 | 0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12100584 | 0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12431697 | 0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12437178 | 0.84[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13329056 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17104764 | 0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17104776 | 0.85[CEU][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17104800 | 0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1950767 | 0.90[ASN][1000 genomes] |
| rs1980654 | 0.84[CEU][hapmap] |
| rs1980655 | 0.85[CEU][hapmap] |
| rs2009191 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2093358 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2208596 | 0.85[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs28403941 | 0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs28444723 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs28474827 | 0.81[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs28474995 | 0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs28488544 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs28509330 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs28652829 | 0.86[EUR][1000 genomes] |
| rs2877369 | 0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs28855496 | 0.90[ASN][1000 genomes] |
| rs4436722 | 0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4902533 | 0.90[ASN][1000 genomes] |
| rs4902535 | 0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4902536 | 0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4902538 | 0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4902539 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4902540 | 0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4902544 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs57990032 | 0.82[EUR][1000 genomes] |
| rs58151429 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs60201005 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs60415085 | 0.86[ASN][1000 genomes] |
| rs6573800 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6573801 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6573805 | 0.84[CEU][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6573814 | 0.85[CEU][hapmap] |
| rs7142112 | 0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7142210 | 0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7142860 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7145771 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7146354 | 0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7154646 | 0.84[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7155097 | 0.85[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7155840 | 0.95[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7157185 | 0.85[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7158544 | 0.85[CEU][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7160115 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8006437 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs8013677 | 0.83[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8016525 | 0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8020795 | 0.84[CEU][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9323501 | 0.90[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9672142 | 0.84[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014