SNP Report
Basic Infomation
| Name | rs10519034 dbSNP |
|---|---|
| Location | chr:2,65706325 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10451656 | 0.84[MEX][hapmap];0.84[MKK][hapmap] |
| rs11675191 | 1.00[YRI][hapmap] |
| rs11675951 | 1.00[YRI][hapmap] |
| rs11683330 | 1.00[YRI][hapmap] |
| rs11683864 | 1.00[YRI][hapmap] |
| rs11684956 | 1.00[YRI][hapmap] |
| rs11685231 | 1.00[YRI][hapmap] |
| rs11689701 | 1.00[YRI][hapmap] |
| rs11693719 | 1.00[YRI][hapmap] |
| rs11694196 | 1.00[YRI][hapmap] |
| rs11695503 | 1.00[YRI][hapmap] |
| rs1437459 | 1.00[YRI][hapmap] |
| rs1437460 | 1.00[YRI][hapmap] |
| rs1437465 | 1.00[YRI][hapmap] |
| rs17030202 | 1.00[YRI][hapmap] |
| rs17030204 | 1.00[YRI][hapmap] |
| rs1989246 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs268123 | 1.00[YRI][hapmap] |
| rs2901767 | 1.00[YRI][hapmap] |
| rs4671664 | 1.00[YRI][hapmap] |
| rs57229475 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs66555874 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67342035 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72808032 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs934732 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs934733 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs934736 | 1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000204929 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014