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rVarBase
SNP Report
Basic Infomation
Name
rs10494826  
dbSNP
Location
chr:1,201085996
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs58258683
0.94[ASN][1000 genomes]
rs58864505
0.94[ASN][1000 genomes]
rs60218820
0.94[ASN][1000 genomes]
rs61746871
0.94[ASN][1000 genomes]
rs73081021
0.94[ASN][1000 genomes]
rs73081023
0.94[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
CACNA1S
Proximal transcriptional regulation
ASCL5
Proximal transcriptional regulation
CACNA1S
Distal transcriptional regulation
LAD1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
eQTL related gene
Source
ANKRD52
SCAN
TMEM9
seeQTL
TMEM9
Pritchard
GPR81
SCAN