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rVarBase
SNP Report
Basic Infomation
Name
rs10469856
dbSNP
Location
chr:2,102888829
Allele
A/T
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12987782
1.00[CHB][hapmap]
rs12999517
1.00[CHB][hapmap]
rs13001301
1.00[CHB][hapmap]
rs13016771
1.00[CHB][hapmap]
rs13022799
1.00[CHB][hapmap]
rs17695648
1.00[CHB][hapmap]
rs1922288
1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3755278
1.00[CHB][hapmap]
rs3771179
1.00[CHB][hapmap]
rs4851562
1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
IL18R1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
MAP3K9
SCAN
SLC9A2
SCAN