SNP Report
Basic Infomation
| Name | rs10160397 dbSNP |
|---|---|
| Location | chr:11,61749766 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10736714 | 0.88[YRI][hapmap] |
| rs10736715 | 0.89[YRI][hapmap] |
| rs10736716 | 0.83[EUR][1000 genomes] |
| rs10792320 | 0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10792321 | 0.89[YRI][hapmap] |
| rs11230849 | 0.88[YRI][hapmap] |
| rs11230851 | 0.88[YRI][hapmap] |
| rs12793372 | 0.80[EUR][1000 genomes] |
| rs12799017 | 0.82[EUR][1000 genomes] |
| rs195445 | 1.00[JPT][hapmap] |
| rs2028062 | 0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3758977 | 0.92[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs57280117 | 0.84[EUR][1000 genomes] |
| rs6591679 | 0.84[EUR][1000 genomes] |
| rs7105652 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000244176 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014